PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g38747.3.p
Common NameBRADI_3g38747, LOC100843369
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 916aa    MW: 98111.6 Da    PI: 8.0184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g38747.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013387406120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C+k+F  +s +  H 
  Bradi3g38747.3.p 387 FECPLCHKTFEEQSWYFGHV 406
                       89************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.089210283IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.01E-7215264IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.102.0E-6219263IPR001739Methyl-CpG DNA binding
PfamPF014297.2E-7220263IPR001739Methyl-CpG DNA binding
SMARTSM003553.4340363IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280342363IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432387417IPR007087Zinc finger, C2H2
SMARTSM003550.68387409IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MVSMATEMVP VVDLRVLSQS DLDALAVASA HAVAPGSSPD AEPLPPLKID RAVFNESAGS  60
RKQTFTRLRL GNAAGSSSSA PTAIDTSPPA TAPSAGNDPG NNLIAYHLRS LFARDDPSRP  120
SSPPPPPETL ALALLGTSHS PPRSPSPDPD RQTTNSKGIS VDLVRLAELD GLYDEELGKR  180
TAGLMSEAEL MGFIKGLGGK WVSQRKKRKF VDASFFGDHL PSGWKLQLGL KRKARQAWVH  240
CLSYVSPTGR KFASCKEVSA YLMSLLGYPE VRKVPIQHNS TGQRDLCDGD GDNDAAGFQH  300
QVDSVVDNQN VLPVTSVAFS SHSSNSHGKV QGDINPANTY KCQECNLTLH DQSAYAQHHM  360
LFHEKGAKRR RKSSKFGQPV AGKDGKFECP LCHKTFEEQS WYFGHVGAHA KHHGLTPEAF  420
LDKISSGEIA DDSLTGMQFT FQELTESREQ NAKTSGQSGS QHLNYPKDKG GDSSKAKEFF  480
STKYMDNFNR PVEACSRSEE ISPVTDTRSA CKYRNNSADY TGVTVPKIAN QLDGRIGGLP  540
EVADFNDQAG SYNDFRPTIL ANANHYKDQI TDRGLAASKH GGVNNTVKAR DVNLNSCLAT  600
ISFPIASANN ETSISLDDTN QSSIAGKCFS GSFNNNDGAS TTSSCSGSNN KVSGFVGVSN  660
GSSNASRCVS ASHGDDAVAN TFSNKNNTMV YHSSLSTHPT SPVATGVDCF PSRSAHPKDS  720
DKEGAYGTRM DAMQNRTSNA AGFSAEAYNS GIYTADVTGR NCAQFNSSFS HLKPNTPSRC  780
SQPESNTLTA NNFTKGIDVN CMNGSFVHRS DANNMKGSFV NRPISNNEPN GYVHSMMGKP  840
SNAMQNHYNG AAPSCAPLSA ANTSQNVNGL MSMQANFGSM STLVHSVGDV PRSSTTKDQK  900
LGLWHPVNMN NIKLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235LKRKARQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235238.10.0PREDICTED: uncharacterized protein LOC100843369
TrEMBLA0A0Q3QAL80.0A0A0Q3QAL8_BRADI; Uncharacterized protein
STRINGBRADI3G38747.10.0(Brachypodium distachyon)